Research Articles
Harnessing GCtree Parsimony Methods with Genotype Abundance for Robust Phylogenetic Inference in Cancer Evolution
This article provides a comprehensive guide to GCtree parsimony methods that incorporate genotype abundance data, a critical advancement for researchers studying tumor evolution and microbial population dynamics.
GARDskin Assay Protocol: A Comprehensive Guide to the Genomic Biomarker Signature for Skin Sensitization Testing
This article provides a detailed protocol and analysis of the GARDskin assay, an in vitro genomic biomarker signature for predicting human skin sensitizers.
FDA NIH New Approach Methodologies (NAMs): A Complete Guide to Implementation & Validation in Drug Development
This comprehensive guide explores the FDA and NIH's pivotal guidance on New Approach Methodologies (NAMs) for biomedical researchers and drug development professionals.
ENISI Modeling: A Powerful Computational Framework for Simulating Mucosal Immunity and Inflammatory Bowel Disease
This article provides a comprehensive overview of the ENteric Immune Simulator (ENISI), a sophisticated agent-based modeling platform designed to unravel the complex dynamics of mucosal immunity, particularly in the gut.
Mastering ELISA Validation: A Comprehensive Guide to Antibody Pair Screening and Spike-Recovery Protocol Optimization
This guide provides researchers, scientists, and drug development professionals with a systematic framework for validating sandwich ELISA assays, with a focus on critical antibody pair selection and spike-recovery experiment execution.
Delta vs Omicron: Comparative Analysis of SARS-CoV-2 Entry Pathways in Human Respiratory Epithelium
This article provides a comprehensive review of the distinct viral entry mechanisms employed by the SARS-CoV-2 Delta and Omicron variants in human respiratory epithelium.
Decoding Immune Cell Fate: A Comprehensive Guide to Dandelion for Single-Cell V(D)J Trajectory Analysis
This article provides a detailed resource for immunologists and computational biologists on leveraging the Dandelion R package for single-cell immune repertoire (B/T cell receptor) trajectory analysis.
Breaking the Multiplexing Barrier: DNA-Tagged Antibodies vs. Traditional Fluorescence for Advanced Biomarker Discovery
This article provides a comprehensive comparison of DNA-tagged antibody (oligo-conjugated) technology and traditional fluorescence-based multiplexing for high-parameter protein analysis.
Decoding Immune Repertoires: A Guide to the ClonalTree MST Algorithm for B Cell Lineage Inference
This article provides a comprehensive guide to the ClonalTree minimum spanning tree (MST) algorithm for reconstructing B cell lineage trees from high-throughput sequencing data.
CRISPR-Cas9 for Antibody Target Validation: A Definitive Guide for Drug Discovery Scientists
This article provides a comprehensive guide for researchers and drug development professionals on using CRISPR-Cas9 gene editing for antibody target validation.