Research Articles
Complete Guide to Exporting MiXCR Clonotype Tables: Tracking Immune Repertoire Abundance for Research
This comprehensive guide explores the complete process of generating and interpreting MiXCR clonotype tables with abundance data, a critical step in adaptive immune repertoire analysis.
Mastering MiXCR Error Correction: A Complete Guide to PCR and Sequencing Error Rate Control for Immunologists
This comprehensive guide explores MiXCR's sophisticated error-correction algorithms designed to manage PCR and sequencing errors in immune repertoire analysis.
Mastering Immune Repertoire Analysis: A Guide to Normalized Shannon, Wiener, and Chao1 Diversity Measures in MiXCR
This comprehensive guide provides researchers, scientists, and drug development professionals with an in-depth understanding of how to calculate, interpret, and apply key alpha diversity measures—specifically the Shannon-Wiener and Chao1 indices—within...
MiXCR Demultiplexing and Multiplet Resolution: A Complete Guide to Cross-Contamination Removal for Immune Repertoire Analysis
This article provides a comprehensive guide for researchers, scientists, and drug development professionals on using MiXCR's advanced features for cross-contamination removal and multiplet resolution in single-cell immune repertoire sequencing.
Mastering Full-Length BCR Sequencing: A Comprehensive Guide to MiXCR Contig Assembly for Immune Repertoire Analysis
This article provides a complete guide to assembling full-length B-cell receptor (BCR) sequences using MiXCR's contig assembly module.
Benchmarking MiXCR Speed: A Comprehensive Performance Comparison with Leading Immune Repertoire Analysis Tools
This article provides a detailed computational speed and performance benchmark of the MiXCR toolkit against other prominent immune repertoire analysis tools, including IMGT/HighV-QUEST, VDJtools, and TRUST4.
MiXCR vs. TRUST4 for Immcantation Pipelines: A Comprehensive Benchmarking Guide for BCR/TCR Repertoire Accuracy
This article provides a detailed, evidence-based comparison of MiXCR and TRUST4, two leading tools for adaptive immune receptor repertoire (AIRR-Seq) analysis, specifically within the context of the Immcantation framework.
Mastering the MiXCR 10x-sc-xcr-vdj Preset: A Comprehensive Guide for Immune Repertoire Analysis
This article provides a detailed guide for researchers and drug development professionals on leveraging the MiXCR `analyze` command's `10x-sc-xcr-vdj` preset for single-cell V(D)J and paired Transcriptome analysis of 10x Genomics...
MiXCR Analysis Mastery: A Complete Guide from Raw Data to Biological Insights for Immunology Researchers
This comprehensive guide provides researchers and drug development professionals with a detailed overview of the MiXCR computational pipeline for adaptive immune repertoire analysis.
MiXCR Allele Inference: Complete Guide for Immune Receptor Profiling in Research & Drug Development
This comprehensive guide explores MiXCR for immune receptor allele inference from sequencing data, a critical step in adaptive immune receptor repertoire (AIRR) analysis.